When I made the RG Sazabi in a previous post, the Mark Setter dissolved the Gamma paint, so I tried various things.
The thumbnail is the marker I used for the test. Conclusion (personal opinion): If you're careful about the amount of Setter, it should work. However, reds are a no-no, and it seems like you'll need to apply the water-based top coat in layers, letting it dry little by little. Next time, I'll try applying the top coat to a Helmwigelinker from a previous work.

Gamma Maca top coat verification | ガンマカ's Gunpla works